Scientific Qi Exploration 13(b)- The Adaptive Immune System

Scientific Qi Exploration – Part 13(b)

Qigong and the Immune System

– The Adaptive Immune System

Martin Eisen, Ph.D.

1.  Adaptive Immunity

Adaptive immunity is also called specific or acquired immunity. It is activated when the innate or non-specific immune system can’t efficiently destroy the foreign organism. Specific immunity is distinguished by its specificity for an invading organism and its ability to remember an encounter so that the second time the same invader is encountered a more rapid and intense response occurs. There are two types of specific immune responses; humoral and cellular.

Humoral immunity is mediated by lymphocytes, which derive from stem cells in the bone marrow. Thus, they are called B cells and only those that do not attack self are released. After maturation, these B cells produce antibodies (IgG, IgM, IgA, IgE), types of proteins described in Section 5, when they encounter an antigen (1, 2).

They are important in combating acute bacterial infections.

Cellular immunity is mediated by lymphocytes which are processed in the thymus to become T cells. Only those cells, which do not attack self are released. The cellular immune system combats intracellular organisms such as TB, performs tumor surveillance, mediates transplant rejection, and fights fungal and viral infections. T cells also mediate the delayed type hypersensitivity reaction, like the skin test for TB. They are distinguished from other types of lymphocyte by the presence of special molecules on their cell surface called T cell receptors (TCR). TCR’s are responsible for recognizing and binding to antigens.

2. Activation of the Adaptive Immune System

Suppose some foreign invaders bypass the barriers of the innate immune system and penetrate a tissue of the body. Chemical danger signals are generated at the site of the infection. Such signals arise from cytokines released by tissue macrophages that have encountered bacteria in the tissue, complement products, and clotting system peptides. Another example is N-formyl-methione containing peptides released by bacteria. All bacteria start producing their cell proteins with the peptide N-formyl-methione. They clip off part of their protein and release N-formyl-methione. When a phagocyte, with a receptor for this peptide, binds to this molecule, it knows that there is a bacterial infection.

Some of these chemical danger signals stimulate endothelial cells of the vasculature near the infection site. This causes these cells to produce cell adhesion molecules which bind to molecules on the surface of the phagocytic cells causing them to adhere to the endothelium. Vasodilators produced at the infection site produce loosening of the junctions between endothelial cells. Then, the phagocytes squeeze between the endothelial cells, in a process called diapedesis, and so cross the endothelial barrier

The first cells to arrive are the neutrophils because they are most numerous of all the types of white blood cell, the most motile and also the first attracted by the chemical signals. The neutrophils send out chemical signals to attract other phagocytes for help. This results in monocytes leaving the blood to enter the tissue and becoming macrophages, which are the very efficient phagocytes. Other chemical signals in the tissues function to attract phagocytes to the infection site by chemotaxis (movement toward an increasing chemical gradient). Still other chemical signals activate the phagocytes to increase phagocytosis and intracellular killing of the invading organisms.

Phagocytic cells have receptors that specifically bind to pathogen associated molecular patterns (PAMPs) (1), such as: glucan (in cell walls of most bacteria), mannose, lipopolysaccharides (LPS) (a major component of outer membrane of gram negative bacteria). The receptors are called glucan receptor, mannose receptor, and the pair CD14/Toll like receptor (TLR4), respectively. CD stands for the cluster of differentiation (cluster of designation). CD along with a number is a used to designate cell surface molecules present on white blood cells. Toll like receptors are another class of protein cell surface molecules in which individual members are distinguished by the letters TLR followed by a number, like TLR4.

German scientists, studying development of the fruit fly Drosophila melanogaster, named the Toll receptor when they discovered that a mutation in the Toll gene resulted in abnormal development. The embryos looked so strange that they exclaimed “toll”, which is German for “wow”. TLR1, TLR2 and TLR6 recognize components from gram-positive bacteria. TLR3, TLR4 and TLR9 recognize molecules from gram-negative bacteria. TLR5 recognizes flagellin, a constituent of bacterial flagella. TLR7 and TLR8 occur in endosomes, membrane bound compartment inside cells where material is sorted before it reaches the degradative lysosome, and recognize single-stranded RNA from viruses. TLR9 is also found in endosomes and acts as a receptor for molecules found in bacterial and viral DNA. TLR3 recognizes double-stranded RNA which is produced by replicating viruses. TLR3 is essential in inducing a protective effect against West Nile Virus by restricting its replication.

The recognition of a PAMP leads to the binding of the invader to the phagocytes receptor, which sends a signal to its nucleus that activates the production of chemical signals, such as, cytokines (1,2) and chemokines, proteins that cause other nearby immune system cells to follow a signal of increasing chemokine concentration towards the source of the chemokine. The attracted cells help kill the invaders directly or with the aid of the complement system’s alternate pathway (1), detailed in Section 5.

After attachment of a bacterium, the phagocyte begins to extend pseudopods around the bacterium. The pseudopods eventually surround the bacterium and engulf it in an enclosed container, called a phagosome. During phagocytosis the granules or lysosomes of the phagocyte fuse with the phagosome and empty their contents. The result is a bacterium engulfed in a phagolysosome which contains the contents of the granules or lysosomes. The bacteria is digested and the phagocyte breaks down protein (antigen) from the bacteria into short peptide chains. Neutrophils eject these antigens outside the cell, where they are carried to lymph modes by the lymphatics. Macrophages, and other Antigen Presenting Cells (APCs), display these antigens on their surface membrane attached to an MHC class II molecule (1,2). The macrophages then carry these antigens to lymph nodes and present these directly to B cells of the specific immune system. The free or carried antigens activate the specific immune system as described in the following sections. If the innate immune system stops the invaders, then the acquired immune system is not activated.

3. Activation of T Cells by Antigen Presenting Cells (APCs)

T cells cannot recognize, and therefore react to free antigen. The antigen must be presented to the T cells by APCs, like macrophages, dendritic cells, Langerhans cells, and certain B cells. The steps in the activation process will be described using macrophages.

Recall that the macrophage digests the bacteria, processes it and produces antigens. Then, special genes on the short arm of chromosome 6 are activated. The genetic material on the top part of these genes changes but the bottom part of the genes does not. This produces different types of Messenger Ribonucleic Acids (mRNAs), which are transcribed into different proteins. The resulting peptide chains are MHC Class II (Major Histocompatibility Complex) molecules with constant tails but variable heads. When one of the antigens fits into the head of such a molecule, the MHC Class II molecule with the bound antigen is placed on the surface of the macrophage. Then the macrophage enters the network of lymph vessels and is carried via lymph flow to a draining lymph node. The lymph nodes are collection points in which APCs can interact with residing T cells. They do this by chemotaxis.

T cells are lymphocytes processed by the Thymus. Each T cell is programmed to react with only one unique antigen, by a T Cell Receptor (TCR) and is also MHC restricted, by a MHC Class II sensor, which is a CD4 surface molecule.

The macrophage wanders from T cell to T cell until it finds one that can react with the unique antigen that it carries. Then, the T cell binds to the macrophage both with its TCR and CD4 molecules. This results in the activation of a CD3 molecule in the T cell and so signals the nucleus to express an IL1 (Interleukin 1) receptor (IL-1R) on its surface. The macrophage releases IL1 molecules, which bind to the IL1 receptor, generating a signal to the nucleus of the T cell to express another molecule, CD28, on its surface in preparation for a second signal from the macrophage. This second signal is not expressed by released molecules, but by a molecular projection, B7, from the surface of the macrophage. When B7 binds with CD28, another signal is sent to the T cell’s nucleus. This activates two genes. The first gene causes the production of a protein IL2, which is excreted from the cell. Meanwhile, the activated second gene promotes the production of another protein on the surface of the cell, which is an IL2 receptor (Il-2R). The binding of the secreted IL2 molecules to the IL2 receptors sends another signal to the nucleus. This self stimulating signal activates the genes for mitosis. A clone of T cells, all reacting with the same antigen, is produced. This process is called clonal selection and expansion. Three different types of clones develop: helper, cytotoxic or killer, regulatory or suppressor and memory T cells.

There are a variety of helper T cells, which have the CD4 marker on their surface. T cells expressing CD4 are also known as CD4+ T cells. The maturation of T helper (TH or Th ) cells depends on the cytokines they are exposed to. IL-12 causes TH1 differentiation and blocks TH2 cell production, while IL-4 causes TH2 differentiation and antagonizes TH1 development. IL-18 also induces TH1 differentiation. TH1 cells stimulate macrophages to kill the bacteria they have engulfed and recruit other leukocytes to the site producing inflammation. TH1 cells help the CD8 pre-killer cells to differentiate into killer T cells. TH2 cells help B cells differentiate into plasma cells, which secrete antibodies as described in Section 4.

Human immunodeficiency virus (HIV) is a lentivirus, a member of the retrovirus family. HIV infects primarily vital cells in the human immune system, such as CD4 T cells, macrophages, and dendritic cells. HIV infection leads to low levels of CD4+ T cells by directly viral killing of infected cells; increasing rates of apoptosis in infected cells; and killing of infected CD4+ T cells by CD8 cytotoxic lymphocytes that recognize infected cells. When CD4+ T cell numbers decline below decline below a critical level of 200 cells per µL, cell-mediated immunity is lost, and the body becomes susceptible to opportunistic infections. Most untreated people infected with HIV eventually develop this acquired immunodeficiency syndrome (AIDS).

Cytotoxic or killer T cells (CD8+) do their work by releasing lymphotoxins, which cause cell lysis. They kill target cells bearing appropriate antigen within the groove of an MHC class I molecule that is identical to that of the T cell. Killer T cells are the main defense against intracellular pathogens, like viruses or certain bacteria which require the inside of cells in order to live, and tumors..

Memory T cells are programmed to recognize and respond to a pathogen once it has invaded and been repelled.

These cells have a prolonged life span and can thereby “remember” specific intruders. The second time an intruder tries to invade the body, T memory cells help the immune system to activate much faster. The invaders are frequently wiped out before any symptoms are felt. This ability to remember and learn is exploited in vaccinations and booster doses.

Suppressor T (TS or Ts) cells inhibit the production of killer T cells once they are unneeded, lest they cause more damage than necessary. TS cells actively suppress activation of the immune system and prevent autoimmune disease. The critical role regulatory T cells play within the immune system is evidenced by the severe autoimmune syndrome that results from a genetic deficiency in regulatory T cells.

4. Activation of B Cells and Production of Antibodies

B cells are lymphocytes that mature in the bone marrow. Every B cell is genetically programmed to produce a unique antibody (or imunoglobulin) and react with a specific antigen by displaying the antibody on its surface as a B cell receptor (BCR) for the antigen. This receptor is a surface immunoglobulin belonging to the family IgM or IgD, described in Section 5. B cells react to a great variety of antigens like peptides, carbohydrates, lipids and DNA.

Figure 1. Summary of Acquired Immune Response


The B cells in the lymph node interact with free antigens.  When the unique matching antigen is encountered, the antigen binds with the BCR.  This activates another molecule CD79 on the B cell’s surface, which signals the nucleus to produce a trans-membrane protein receptor (IL-4R) for IL4.  Recall that the clonal expansion of T cells with the same antigen is also occurring in the lymph node.  When enough T cells have been produced, another T cell gene is activated, which produces another molecule, IL4, which is excreted from the T cells.  IL4 is a B cell growth factor.  When it binds with the IL-4R, it signals the B cell’s nucleus to induce mitosis and a clone of B cells with the same BCRs is produced.  When enough B cells are produced, another B cell surface receptor IL-5R is expressed.  Meanwhile, the clone of helper T cells (TH2), is generating and releasing an IL5 molecule, which is a B cell differentiation factor.  When Il5 binds with the IL-5R, it causes the B cells to convert to plasma cells.  These plasmas cells produce their characteristic antibodies.

Some clones of B cells form B memory cells that remember the same pathogen for faster antibody production in future infections.  T memory cells have a longer lifespan than B memory cells.

The free antibodies pass through the bloodstream and so reach the foreign invaders.  They bind with foreign cells antigens and are activated.  Phagocytes, such as neutrophils and macrophages, have receptors for the activated antibodies, which bind the bacteria very tightly, so that they cannot escape.  This facilitates phagocytosis.  These antibodies act as opsonins, an antibody in blood serum that causes bacteria or other foreign cells to become more susceptible to the action of phagocytes.  Another result is the activation of complement which can kill bacteria as detailed in Section 6.

Some invaders cannot be completely eliminated.  The immune system builds a wall around them with adhering phagocytes, particularly macrophages.  The wall is called a granuloma.  The imprisoned organisms may survive indefinitely.  However, if the immune system is weakened and the walls crumble, the invaders may start to multiply and cause symptoms, even years later.  Granulomas are seen in a wide variety of diseases, both infectious (e.g. tuberculosis, leprosy, cat-scratch disease) and non-infectious (Chrohn’s disease, pulmonary rheumatoid nodules and aspiration of food and other particulate material into the lung).

A summary of the adaptive immune response appears in Figure1 (2, 3, 4).

5.   Structure and Types of Antibodies or Immunoglobulins (Igs)

Antibodies are soluble proteins secreted by clones of primed B cells and which are the gamma globulin part of the blood proteins.  Antibodies are composed of four polypeptide chains as shown in Figure 2.  There are two “light” chains (lambda or kappa), and two “heavy” chains (alpha, delta, gamma, epsilon or mu). The type of heavy chain determines the five antibodies’ isotypes (IgA, IgD, IgG, IgE, IgM).  The percentage composition of gamma globulin is IgG-76%, IgA-15%, IgM-8%, IgD-1%, and IgE-0.002%.  IgM is the major antibody produced in the primary immune response, while IgG dominates in the secondary immune responses. IgM is physically much larger than the other antibodies. IgG is the only antibody that can cross the placental barrier to the fetus and confers the 3 to 6 month immune protection of newborns.  IgE is responsible for autoimmune responses, such as: allergies and diseases like arthritis, multiple sclerosis, and systemic lupus erythematosus.  The secondary reponse is faster and the produced Ab, mainly IgG, are more effective.

The light chains contain 220 amino acid residues while heavy chains are composed of 440-550 amino acids. Each chain has “constant” and “variable” regions as shown in Figure 2. Variable regions are contained within the amino (NH2) terminal end of the polypeptide chain (amino acids 1-110). When comparing one antibody to another, these amino acid sequences are quite distinct.  Within the same isotype, constant regions, composed of amino acids 111-220 (or 440-550), are fairly uniform, from one antibody to another.  “Hypervariable” regions, or “Complementarity Determining Regions” (CDRs) are found within the variable regions of both the heavy and light chains. These regions serve to recognize and bind specifically to antigen. The four polypeptide chains are held together by covalent disulfide (-S-S-) bonds.

Antibody molecules are very flexible. This freedom of movement allows it to more easily conform to an antigen. The upper part or Fab (antigen binding) portion of the antibody molecule (physically and not necessarily chemically) attaches to epitopes on the antigen (1).  The Fc region is crystallizable and is the end to which immune cells can attach.

Figure 2. Basic Immunoglobulin Structure

Known methods that antibodies inactivate antigens are: using complement as explained in Section 6, neutralization (binding to specific sites to prevent attachment), agglutination (suspension into clumps), and precipitation (causing insolubility and settling out of solution). Some properties of antibodies and their qualitative changes in some diseases appear in Table1.

Table 1.  Properties of Immunoglobulins and Effects of Diseases

Ig Properties Increase in Decrease in
IgG Major Ig in serum and extra vascular spaces. Crosses the placenta & fetus until infant makes own. Fixes complement; binds to PMNs, monocytes & macrophages to act as opsonin. Protects against fungi, bacteria, viruses & other toxic substances. Chronic granulomatous infections,
infections of all types, hyperimmunization, liver disease,
severe malnutrition, dysproteinemia, diseases associated with hypersensitivity granulomas, dermatologic disorders, and IgG myeloma; rheumatoid arthritis
Agammaglobulinemia, lymphoid aplasia, selective IgG, IgA deficiency,
IgM First Ig to be made by the fetus. First Ig made by B cells when it is first stimulated by antigen; good agglutinating Ig . Normally, it is present in the bloodstream but not in the tissues. AdultWaldenström’s macroglobulinemia,
trypanosomiasis, actinomycosis,
Carrión’s disease (bartonellosis),
malaria, infectious mononucleosis,
lupus erythematosus, rheumatoid arthritis; dysmaglobulinemia (certain cases)
Note: In the newborn, a level of IgM above 20 ng./dl is an indication of in utero stimulation of the immune system and stimulation by the rubella virus, the cytomegalovirus, syphilis, or toxoplasmosis.
Agammaglobulinemia, certain
lymphoproliferative disorders, lymphoid aplasia, IgG and IgA myeloma, dysgammaglobulinemia;
chronic lymphoblastic leukemia
IgA Major class of Ig in secretions – tears, saliva, colostrum, mucus & so is important in local (mucosal) immunity; normally it does not fix complement, unless aggregated; binds to some cells – PMN’s , lymphocytes.It is in colostrum Wiskott-Aldrich syndrome, cirrhosis of the liver (most cases), certain stages of collagen and other autoimmune disorders such as rheumatoid arthritis and lupus erythematosus, chronic infections not based on immunologic deficiencies; IgA myeloma Hereditary ataxia telangiectasia,
immunologic deficiency states (e.g.,
dysgammaglobulinemia, congenital and acquired agammaglobulinemia, and hypogammaglobulinemia),
malabsorption syndromes, lymphoid aplasia, IgG myeloma, acute lymphoblastic leukemia, chronic lymphoblastic leukemia
IgD It is in low levels in serum; its role in serum uncertain, it is primarily found on B cell surfaces where it functions as a receptor for antigen; it doesn’t bind complement Chronic infections, IgD myelomas
IgE Involved in allergic reactions; binds to basophils & mast cells, IgE is involved in allergic reactions. Binding of the allergen to the IgE on the cells results in the release of pharmacological products- leading to allergic symptoms; serum IgE levels rise in parasitic diseases, measuring IgE levels is helpful in diagnosing parasitic infections. Eosinophils have Fc receptors for IgE & binding of eosinophils to IgE-coated helminths results in killing of the parasite; it does not fix complement Atopic skin diseases such as eczema, hay fever, asthma, anaphylactic shock; IgE-myeloma Congenital agammaglobulinemia,
hypogammaglobulinemia due to faulty metabolism or synthesis of immunoglobulins

6. Complement System

The complement system is a biochemical sequence of reactions that complement, the ability of antibodies to destroy pathogens. It is part of the innate immune system, but it can also be activated by the adaptive immune system.

The complement system consists of about 30 proteins. comprising approximately 5% of the globulin portion of the blood.  They are designated by a letter, such as, C, and sometimes a number or a number and a letter or letters (e.g. C2a).  These proteins are mainly synthesized by the liver, but also by macrophages and some B cells.  They normally circulate as inactive precursors. When stimulated by one of several triggers three biochemical pathways are activated: the classical complement pathway, the mannose-binding lectin complement pathway, and the alternative pathway (See Fig. 3.).  They all result in the lysis or destruction of the foreign cell’s membrane, by their common ending pathway, the lytic attack pathway.  However, the classical pathway is not activated immediately.  It takes about seven to fourteen days to produce sufficient antibodies.  Thus, the other two pathways are essential for an instantaneous reaction to a foreign invasion of the body.

The first part of each pathway up to the generation of C5 convertase will be described and then the final lytic attack pathway. The classical and lectin pathways probably developed from the more primitive alternate pathway.


The following definitions will be used in describing the pathways. C activation is the alteration of a C protein so that it reacts with the next component. C inactivation is the loss of activity of an earlier C component, for example, hemolysis.

Convertase/esterase is an altered C protein which acts as a proteolytic enzyme for another C component.

(a) The first part of the classical pathway

The proteins involved in this pathway are: C1, composed of three different proteins C1q, C1r and C1s, C2, C3, C4, C5, C6, C7, C8, and C9.

1. After IgM or IgG binds to an antigen, the Fc portions of these molecules are activated, enabling the binding of the C1 complement. C1 binding does not usually occur to antibodies that have not been bound to an antigen. The binding of C1 to the antibody is via C1q and C1q must cross link at least two antibody molecules before it is firmly fixed.

2. C1q forms a complex with C1r which activates C1s to bind to C1r. Ca ion is required to stabilize CqCrCs.

3. C4 binds to membrane and the activated C1s cleaves C4 into two components C4a and C4b. The larger C4b fragment binds to the membrane and the C4a fragment diffuses away. Once C4b is bound, it binds C2 in the presence of Mg ions.

4. Activated C1s cleaves C4b-bound C2 into C2a and C2b.  The larger peptide C2a binds to the membrane in association with C4b, and C2b is released.

5. The resulting C4bC2a complex is a C3 convertase and cleaves C3 into C3a and C3b. The larger fragment C3b binds to the membrane in association with C4b and C2a, and C3a diffuses away. The resulting C4bC2aC3b is a C5 convertase.

If the classical pathwa4y were not regulated there would be continued production of C2b, C3a, and C4a. Table 2 summarizes the ways in which the classical pathway is regulated.

Table 2 Regulation of the Classical Pathway

Component Regulation
All C1-inhibitor (C1-INH, C1 esterase inhibitor); dissociates C1r and C1s from C1q
C3a C3a-INA;Carboxypeptidase B); inactivates C3a
C3b Factor H facilitates the degradation of C3b by Factor I
C4a C3 inactivator (C3-INA)
C4b C4 binding protein(C4-BP) facilitates degradation of C4b by Factor I; C4-BP also prevents association of C2a with C4b thus blocking the formation of C3 convertase

The importance of C1-INH in regulating the classical pathway is that C1-INH deficiencies are associated with the development of hereditary angioedema.

(b) First part of the lectin pathway

The proteins involved in this pathway are: Mannose-binding lectin (MBL) and MBA associated serine proteases (MASP-1, Masp-2), C4, C2, and C3. Serine proteases or serine endopeptidases are proteases (enzymes that cut peptide bonds in proteins) in which one of the amino acids in the active site of the enzyme is serine.

1. MBL recognizes carbohydrate patterns (mannose and fructose residues), found on the surface of a large number of pathogens, including bacteria, viruses, protozoa and fungi. The binding of MBL to a pathogen activates the lectin pathway and results in the binding of MASP-1 followed by the binding of MASP-2. MASP-1 and MASP-2 are analogous to C1r and C1s, respectively and MBL is analogous to C1q.

2. The MBL/MASP-1/MASP-2 molecular complex (denoted MASPs) binds C4 cleaving it into C4a and C4b. The C4b fragment binds to the membrane and the C4a fragment diffuses away. C4b binds C2

3. Activated MASPs also cleave C2 into C2a and C2b. C2a binds to the membrane in association with C4b and C2b is released.

4. The resulting C4bC2a complex is a C3 convertase, which cleaves C3 into C3a and C3b. C3b binds to the membrane in association with C4b and C2a and C3a diffuses away. The resulting C4bC2aC3b is a C5 convertase.

(c) First part of the alternative pathway

The proteins involved in this pathway are: Factors B, D, H and I; C3, and Properdin (P). The alternative pathway provides a means of non-specific defense against infection without antibodies. Hence, it provides a first line of defense against a number of infectious agents.

1. The first step in its activation is the production of C3i by a low level of spontaneous hydrolysis of C3 in serum.

2. Complement Factor B binds to C3i which enables complement Factor D to cleave Factor B into Bb and release Ba. This step requires Mg ions.

3. Although the C3iBb complex has a short half-life, it acts as a C3 convertase and cleaves C3 into C3a and C3b.

4. Once C3b is formed, Factor B will bind to it becoming susceptible to cleavage by Factor D. The resulting C3bBb complex is a C3 convertase that will continue to generate more C3b. It is stabilized by the globular complement protein P complexing with C3b, but not on autologous membranes.

5. Some of the C3b, generated by the stabilized C3 convertase on the cell surface, associates with the C3bBb complex and forms a stable C3bBbC3b complex. This is the C5 convertase of the alternate pathway.

If this process described above was allowed to continue unconstrained, all C3 in the serum would be depleted and so it is normally controlled. However, patients with genetic deficiencies of Factor H or I, which play a role in the control process, have a C3 deficiency and increased susceptibility to infections by viruses, bacteria and parasites.

Control of C3 depletion

The depletion of C3 is controlled by either blocking the formation of C3 convertase, dissociating C3 convertase, or by enzymatically digesting C3b. The details follow. When the produced C3b binds to host (autologous) membranes, it interacts with decay accelerating factor (DAF), which blocks the binding of Factor B with C3b. DAF is not present in bacterial or other pathogen’s cell walls. This prevents the formation of additional C3 convertase. DAF also accelerates the dissociation of Bb from C3b in C3 convertase that has already formed, thus halting the production of additional C3b. s C3b binds to complement receptor 1 (CR1). C3b is inactivated by enzymatic degradation by Factor I. If some of this inactivated C3b is present in the microenvironment, it will not be able to bind to Factor B. Finally, Factor H facilitates the enzymatic degradation of C3b by Factor I. Factor I is still effective even if no Factor H is present.

(d) Lytic attack pathway

1. C5 convertase from the classical (C4b2a3b), lectin (C4b2a3b) or alternative (C3bBb3b) pathway cleaves C5 into C5a and C5b. C5a remains in the fluid phase and the C5b is membrane bound.

2. C5b rapidly associates with C6 and C6 binds C7 and the C5bC6C7 complex inserts into the membrane. Subsequently C8 binds, followed by multiple C9 binding.

3. The C9 molecules form a pore in the membrane through which the cellular contents leak and lysis occurs. Lysis is not an enzymatic process; it is thought to be due to physical damage to the membrane. The complex consisting of C5bC6C7C8C9 is referred to as the membrane attack complex (MAC).
Gram-negative bacteria have structurally weaker membranes than Gram-positive bacteria and so are more susceptible to MAC. The genus Neisseria contains two important human Gram-negative pathogens, N. gonorrhoeae and N. meningitidis. Deficiency in MAC results in greater susceptibility to gonorrhea, and meningococcal meningitis.

(e) Properties of complement activation pathway products

The activated components of complement contribute to resistance, and inflammation and anaphylaxis as indicated in Table 3.

Table 3 Biological Effects of Complement Activation Products

Product Effect Regulation
C4a Anaphalotoxin; like C3a, but not as powerful as C3a C3-INA
C4b Opsonin. Activates phagocytes C4-BP, Factor I
C2b Prokinin cleaved by plasmin & yields kinin. Result is edema C1-INH
C3a Activates basophils & mast cells to degranulate leading to contraction of smooth muscles & increased vascular permeability; can result in anaphylaxis. C3-INA(carboxy-peptidase 3)
C3b Activates phagocytic cells and opsonin FactorH, Factor I
C5a Potent anaphylotoxin Chemotactic factor for neutrophils; stimulates respiratory burst in them. Activates monocytes to produce inflammatory cytokines. Activates mast cells to degranulate leading to contraction of smooth muscles & increased vascular permeability. C3-INA(carboxy-peptidase 3)
C5b67 Can dissociate from the membrane & enter the fluid phase & bind to other nearby cells, leading to their lysis Protein S (vitronectin). Binds Cb67 to stop binding to other cells

An additional function of complement is the removal of immune complexes. Immune complexes are clusters of interlocking antigens and antibodies. Under normal conditions soluble immune complexes bind C3b and C3b binds to CR1 receptors on red cells. They are rapidly removed from the bloodstream by macrophages in the spleen and Kupffer cells in the liver. Immune complexes can also activate the alternative pathway. The immunoglobulin concentration required for such activation is relatively high.

In some circumstances, immune complexes continue to circulate. Eventually they become trapped in the tissues of the kidneys, lung, skin, joints, or blood vessels. Their final disposition probably depends on the nature of the antigen, the class of antibody, and the size of the complex. There they set off reactions that lead to inflammation and tissue damage.

For example, if IgA complexes are not removed Berger’s disease and Henoch-Schonlein purpura (HSP) may result.

IgA nephropathy (Berger’s disease) occurs when an IgA complexes lodge in your kidneys. This hampers your kidneys’ ability to filter waste, excess water and electrolytes from your blood. This can lead to blood and protein in the urine, high blood pressure, and swollen hands and feet. Usually Berger’s disease progresses slowly. Some people eventually achieve complete remission, while others develop end-stage kidney failure.

HSP is a systemic inflammation of blood vessels resulting from the deposition of IgA immune complexes. this inflammation causes bleeding in the small blood vessels (capillaries) in your skin, joints, intestines and kidneys. The main symptom is a purplish rash, typically on the lower legs and buttocks. HSP often causes abdominal pain and aching joints, and in some people, kidney problems. It usually resolves within several weeks and requires no treatment apart from symptom control, but may relapse in a third of the cases and cause irreversible kidney damage in about one in a hundred cases.

7. Some Diseases of Deficiency of Complement

Tables 4, 5 and 6 give some diseases caused by deficiencies of complement in the three pathways.

Table 4. Complement deficiency and Disease in the Classical Pathway

Complement Deficiency Mechanism Disease
C1INH Overproduction of C2b Hereditary angioedema
C1, C2, C4 Opsonization of immune complexes helps keep them soluble. Deficiency results in increased precipitation in tissues and inflammation Predisposition to SLE (systemic lupus erythematosus)

Table 5 .     Complement deficiency and Disease in the Lectin Pathway

Complement Deficiency Mechanism Disease
MBL Can’t initiate lectin pathway Susceptibility to bacterial infections in infants or immunosuppressed

Table 6.     Complement deficiency and Disease in the Alternative Pathway

Complement Deficiency Mechanism Disease
Factors B or D Insufficient opsonization of bacteria Susceptibility to pyogenic (pus-forming) bacterial infections
C3 Insufficient opsonization and inability to utilize the membrane attack pathway Susceptibility to bacterial infections
C5, C6, C7 C8, and C9 Inability to attack the outer membrane of Gram-negative bacteria Susceptibility to Gram-negative infections
Properdin (X-linked) Lack of opsonization of bacteria Susceptibility meningococcal meningitis
Factors H or I Uncontrolled activation of C3 leading to depletion of C3 C3 deficiency and susceptibility to bacterial infections

Why aren’t white and red blood cells or platelets damaged as they pass through a region in which complement has been activated? All of these cells are derived from a common stem cell which has a phosphatidylinositol glycan anchor biosynthesis, class A (PIGA) gene. The PIGA gene provides instructions for making a protein called phosphatidylinositol glycan class A. This protein takes part in a series of steps that produce a molecule called Glycosylphosphatidylinositol (GPI anchor) which serves to anchor proteins to the cell’s surface. The protein that is anchored is CD55, called the decay accelerating factor (DAF). The classical pathway is controlled by membrane-bound DAF by its ability to bind the C3 convertase C4b2a. The alternative pathway is controlled by DAF binding to C3 convertase, C3bBb. By binding and dissociating the C3 convertases in both paths, C3b peptides can no longer be produced to bind to the surface of the cells. DAF can also bind and dissociate C5 convertases on the surface of cells, which stops the formational MAC. Therefore, the cells protected by DAF are not engulfed by phagocytic cells or lysed by membrane attack complexes.

Acquired mutations in the PIGA gene lead to deficient GPI anchors and so DAF cannot anchor to blood cells. This results in the destruction of blood cells and hemolytic anemia, thrombosis, and red urea, because of hemoglobin in the urine. This disease is called paroxysmal nocturnal hemoglobinuria (PNH) or Marchiafava-Micheli syndrome.


1. Eisen, M. Part 13(a): Qigong and the Immune System. The Innate Immune System. Qi Dao, Sept/Oct., p. 20-27, 2010.

2. Male, D. et al. Immunology. Ed. 7, Elsevier Health Sciences, 2006.

3. Mayer, G. Immunology at

4. Dr. Najeeb’s Channel at See Intro to Immunology and Complement System.

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About Martin Eisen

By profession, Dr. Eisen was a university Professor specializing in constructing mathematical models such as those in cancer chemotherapy and epilepsy. He has studied and taught Yoga, Judo, and Aikido. Dr. Eisen was the founder and chief-instructor of the Shotokan Karate Clubs at Carnegie-Mellon and Dusquene Universities and the University of Pittsburgh. He helped teach Yoga in Graterford prison. His curiousity about the relation of Qi to healing and martial arts led him to study TCM, Tai Chi and Praying Mantis Kung Fu. He was initiated as a Disciple of Master Gin Foon Mark. Dr. Eisen now teaches (at his Kwoon and by webcam), writes and researches Praying Mantis, Qigong and Yang Tai Chi - see
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11 Responses to Scientific Qi Exploration 13(b)- The Adaptive Immune System

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